1. Pre-compiled datasets

1.1. Test datasets

Test dataset can be downloaded from this link

1.2. Reference gene models

Reference gene model files can be downloaded from this link

1.3. Annotation datasets

• pre-built TSV file used to annotate CpG according to its 450K/850K probe ID.

• MethylationEPIC_CpGtools.tsv.gz

• MethylationEPIC_CpGtools.Dec6_2022.tsv.gz (Fixed gene symbols that were incorreclty converted into dates by Excel. )

• BED files used to annotate CpG according to its genomic positions (hg19/GRCh37)

• hg19_ENCODE_338TF_130Cell_E3.bed.gz

• hg19_ENCODE_DNaseI_125Cells_V3.bed.gz

• hg19_ENCODE_H3K27ac_11_cellLines_ChIP.bed.gz

• hg19_ENCODE_H3K4me1_11_cellLines_ChIP.bed.gz

• hg19_ENCODE_H3K4me3_11_cellLines_ChIP.bed.gz

• hg19_ENCODE_chromHMM_states_9Cells.merge.bed.gz

• hg19_FANTOM_enhancers_phase_1_and_2.bed.gz

• BED files used to annotate CpG according to its genomic locations (hg38/GRCh38)

• hg38_ENCODE_338TF_130Cell_E3.bed.gz

• hg38_ENCODE_DNaseI_125Cells_V3.bed.gz

• hg38_ENCODE_H3K27ac_11_cellLines_ChIP.bed.gz

• hg38_ENCODE_H3K4me1_11_cellLines_ChIP.bed.gz

• hg38_ENCODE_H3K4me3_11_cellLines_ChIP.bed.gz

• hg38_ENCODE_chromHMM_states_9Cells.merge.bed.gz

• hg38_FANTOM_enhancers_phase_1_and_2.bed.gz