3. CpGtools Release history

3.1. Version 2.0.3

Fix a bug (pvalue and adjusted pvalue are n/a for all the CpGs) during ANOVA analysis

3.2. Version 2.0.1

Add predict_sex.py and beta_selectNBest.py on 09/05/2024

3.3. Version 1.10.0

Add beta_UMAP.py on 09/24/2021

3.4. Version 1.0.8

Fix bug for beta_tSNE.py and beta_PCA.py when sample IDs are number.

3.5. Version 1.0.7

Add CpG_density_gene_centered.py on 03/11/2020

3.6. Version 1.0.2

Add beta_tSNE.py on 07/15/2019: This program performs t-SNE (t-Distributed Stochastic Neighbor Embedding) analysis for samples.

3.7. Version 1.0.1

Add CpG_anno_position.py on 07/07/2019: This program annotates CpG by its genomic position using prebuilt or user-provided annotation files.

3.8. Version 1.0.0

Initial release